Table 2: chem_comp_atom category: tokens in this section are looped through for each atom in the chemical component
Token Definition Example
_chem_comp_atom.comp_id Same as _chem_comp.id
HYP
_chem_comp_atom.atom_id Identifier for each atom in the chemical component - new format
CA
_chem_comp_atom.alt_atom_id Previous format of identifier for each atom in the chemical component.
CA
_chem_comp_atom.type_symbol The element type for each atom in the chemical component.
C  O  N, etc.
_chem_comp_atom.charge The formal charge assigned to each atom in the chemical component.
0
_chem_comp_atom.pdbx_align Determines which column the atom name appears within the PDB coordinate files. The possible values are 0 or 1.
0 or 1
_chem_comp_atom.pdbx_aromatic_flag Defines atoms in an aromatic moiety.
Y or N
_chem_comp_atom.pdbx_leaving_atom_flag Flags atoms with "leaving" capability.
Y or N
_chem_comp_atom.pdbx_stereo_config Defines the stereochemical configuration of the chiral center atom.
R or S or N
_chem_comp_atom.model_Cartn_x The x component of the coordinates for each atom specified as orthogonal angstroms.
26.056
_chem_comp_atom.model_Cartn_y The y component of the coordinates for each atom specified as orthogonal angstroms.
5.609 
_chem_comp_atom.model_Cartn_z The z component of the coordinates for each atom specified as orthogonal angstroms.
5.594
_chem_comp_atom.pdbx_model_Cartn_x_ideal Computed idealized coordinates, x component of the vector (in Angstroms)
number
_chem_comp_atom.pdbx_model_Cartn_y_ideal Computed idealized coordinates, y component of the vector (in Angstroms)
number
_chem_comp_atom.pdbx_model_Cartn_z_ideal Computed idealized coordinates, z component of the vector (in Angstroms)
number
_chem_comp_atom.pdbx_ordinal Ordinal index for the chemical component atom list.
1 (integer)