The best way to deposit your structure is in PDBx/mmCIF format.
Recent versions of the refinement packages Phenix (version 1.8.2 or newer) and REFMAC (version 5.8 or newer) support
outputting PDBx/mmCIF files directly and ready for deposition. Package specific instructions are:
If you have have any questions about the above instructions, we suggest that you contact the authors of the
program in question.